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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7173764_7173930_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7173764 - 7173930
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGGT
5'SS Class:
strong_major
3'SS Sequence:
GGTGTCTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
ACTTTCAAGACT
Flanking Amino Acid:
QDEDLQDQGKVWCFLSGFQC
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.4
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
77.6
0.62
0.9
73.4
41.9
Minor 5ss
30.3
-2.3
3.7
46.8
48.5
Minor BPS
48.4
-0
2
69.54
41.6

Associated Gene:

Gene:
EFCAB5
Ensembl Gene ID:
ENSAPLG00000011243
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032701
7152792 - 7189414
36623