About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7175879_7177133_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7175879 - 7177133
Intron Length:
1255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTCAAAGACC
Flanking Amino Acid:
EESKIEQLEKVRRTSRLAHR
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.7
0.69
0.8
76.7
31.9
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
45.7
-0.3
2.2
63.97
41.7

Associated Gene:

Gene:
EFCAB5
Ensembl Gene ID:
ENSAPLG00000011243
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032701
7152792 - 7189414
36623
ENSAPLT00000011715
7152792 - 7189414
36623