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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7187976_7189271_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7187976 - 7189271
Intron Length:
1296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GTTGCAGTTACA
Flanking Amino Acid:
QGELLLDCIGGVPRAELWMQ
Intron Amino Acid Position:
1200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
43
-0.5
2.5
61.26
44.3

Associated Gene:

Gene:
EFCAB5
Ensembl Gene ID:
ENSAPLG00000011243
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032701
7152792 - 7189414
36623
ENSAPLT00000011715
7152792 - 7189414
36623