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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7198623_7200241_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7198623 - 7200241
Intron Length:
1619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
ATTCCTTTATCT
Flanking Amino Acid:
EALKKQVMKQTKLEIQKALS
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
82.4
0.73
0.9
81.2
36.5
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
68.3
0.65
1.6
83.89
36.8

Associated Gene:

Gene:
NSRP1
Ensembl Gene ID:
ENSAPLG00000011228
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011678
7191105 - 7205866
14762