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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7200374_7201265_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7200374 - 7201265
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGATACT
5'SS Class:
major
3'SS Sequence:
CCTCCTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
TCAGCATTAAAC
Flanking Amino Acid:
RMLSGNDDKKPRYIHNILKA
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.3
68.7
42.2
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
75.8
0.58
0.8
73.5
29.8
Minor 5ss
31.7
-2.1
3
43.7
43.5
Minor BPS
51.5
0.03
1.8
61.76
43.1

Associated Gene:

Gene:
NSRP1
Ensembl Gene ID:
ENSAPLG00000011228
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011678
7191105 - 7205866
14762