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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7202230_7204176_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7202230 - 7204176
Intron Length:
1947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGATGC
5'SS Class:
strong_major
3'SS Sequence:
CATAAAAATGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTTTTAACA
Flanking Amino Acid:
EMPKCSFREARIKEEKTNTS
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
67.1
39.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
53.7
0.08
1
45.6
40
Minor 5ss
37.2
-1.4
3.3
51
45.6
Minor BPS
80
0.94
1
82.25
33.1

Associated Gene:

Gene:
NSRP1
Ensembl Gene ID:
ENSAPLG00000011228
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011678
7191105 - 7205866
14762