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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7211744_7214443_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7211744 - 7214443
Intron Length:
2700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
ATGCTTATACTT
Flanking Amino Acid:
WVAISPIFLLFVTCSFLSNP
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
66.1
0.4
1
73
31.5
Major PPT
90.3
0.91
0.7
88.4
28.7
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
44.4
-0.3
1.7
59.69
38.4

Associated Gene:

Gene:
SLC6A4
Ensembl Gene ID:
ENSAPLG00000010715
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011217
7209712 - 7223539
13828