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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7217142_7217227_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7217142 - 7217227
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCTAA
5'SS Class:
major
3'SS Sequence:
ATTCCTACACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTACCTCTAATT
Flanking Amino Acid:
EDVSEVAKDTGPSLLFITYA
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
63.8
39
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
68.6
0.42
1
60.8
39.5
Minor 5ss
41.9
-0.9
3.2
51.6
47.5
Minor BPS
61.6
0.44
1.6
79.17
36.7

Associated Gene:

Gene:
SLC6A4
Ensembl Gene ID:
ENSAPLG00000010715
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011217
7209712 - 7223539
13828