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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7220712_7221138_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7220712 - 7221138
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTTCCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
AATATCTACACT
Flanking Amino Acid:
YSISPAEEFYTRQVLQVHRS
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.3
75
35.3
Major BPS
60.3
0.26
1
65.5
28
Major PPT
90.5
0.91
0.6
88.7
20.5
Minor 5ss
34.4
-1.8
3.1
40.8
38.7
Minor BPS
47.3
-0.1
2.1
67.75
43

Associated Gene:

Gene:
SLC6A4
Ensembl Gene ID:
ENSAPLG00000010715
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011217
7209712 - 7223539
13828