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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7222237_7222926_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7222237 - 7222926
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTTCTTAACT
Flanking Amino Acid:
FPYICYQNGGGAFLIPYTIM
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
75.8
34.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
85.7
0.8
0.8
80.6
31.5
Minor 5ss
28.4
-2.5
3
34.8
41.6
Minor BPS
87.9
1.27
0.9
95.32
31.5

Associated Gene:

Gene:
SLC6A4
Ensembl Gene ID:
ENSAPLG00000010715
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011217
7209712 - 7223539
13828