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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7252471_7253752_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7252471 - 7253752
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCTCCTTAAAC
Flanking Amino Acid:
RRMNEILNHKMREYCLRLRN
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
73
0.52
0.9
69.6
34.5
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
80.6
0.94
1.3
83.76
35.4

Associated Gene:

Gene:
BLMH
Ensembl Gene ID:
ENSAPLG00000010286
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010759
7237488 - 7256880
19393