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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7253842_7256100_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7253842 - 7256100
Intron Length:
2259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CAGTTGTTAACA
Flanking Amino Acid:
GQWDMLVNIIEKYGVVPKKY
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
80.7
0.69
0.8
73.5
37.1
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
53.6
0.11
2.1
63.5
43.2

Associated Gene:

Gene:
BLMH
Ensembl Gene ID:
ENSAPLG00000010286
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010759
7237488 - 7256880
19393