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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7262452_7262937_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7262452 - 7262937
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTCGT
5'SS Class:
major
3'SS Sequence:
TTACTCTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTACTCTGAACA
Flanking Amino Acid:
VKVSVILDVQFPPNVTEDET
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
61.7
44.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.4
0.44
1
65.9
39.5
Minor 5ss
32.5
-2
3
42.1
44.5
Minor BPS
66.4
0.51
1.4
74.77
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046607
7261881 - 7270890
9010
ENSAPLT00000036044
7261881 - 7268197
6317
ENSAPLT00000024359
7261881 - 7270404
8524