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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7264198_7270132_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7264198 - 7270132
Intron Length:
5935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCAG
5'SS Class:
major
3'SS Sequence:
CTCTCTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGGCAG
U12 Branch Point Sequence:
CTCTCTTCAACA
Flanking Amino Acid:
RSAWPSSAACRHRLGSSEMA
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.3
51.6
46.7
Major BPS
37.4
-0.7
1.7
42.8
49.4
Major PPT
76.8
0.6
0.8
72.9
30.5
Minor 5ss
34.6
-1.8
3.5
46.8
48.5
Minor BPS
64.8
0.46
1.6
71.01
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024359
7261881 - 7270404
8524