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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7272914_7282011_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7272914 - 7282011
Intron Length:
9098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CTAACTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTGAC
U12 Branch Point Sequence:
CTCTGCCTAACT
Flanking Amino Acid:
TNGAQWYDVEGGMQDYNYVW
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
58.8
0.22
1.3
51
44.3
Major PPT
72.3
0.5
0.9
69.4
36.5
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
54.7
0.23
2.2
76.28
46.2

Associated Gene:

Gene:
CPD
Ensembl Gene ID:
ENSAPLG00000009596
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010066
7269980 - 7296129
26150