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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7283068_7283655_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7283068 - 7283655
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TTTCCCCCCACA
Flanking Amino Acid:
GTYNVTAVVMGYAPVTKENI
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.1
38.8
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
79.2
0.66
0.7
73.1
25.2
Minor 5ss
38.9
-1.2
3.3
48.7
47
Minor BPS
47.6
-0.1
2.3
70.3
41.4

Associated Gene:

Gene:
CPD
Ensembl Gene ID:
ENSAPLG00000009596
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010066
7269980 - 7296129
26150