Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7285682_7286886_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7285682 - 7286886

Intron Length:

1205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTCAG

5'SS Class:

strong_major

3'SS Sequence:

GTCTCCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTCAA

U12 Branch Point Sequence:

TTCAAGTCAAAT

Flanking Amino Acid:

PFVLSANLHGGSLVVNYPFD

Intron Amino Acid Position:

685

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

70.6

41.3

Major BPS

66.8

0.42

1.1

69.4

37.7

Major PPT

76.9

0.6

0.8

69.9

30.9

Minor 5ss

39.7

-1.2

2.8

47.2

Minor BPS

41.9

-0.5

2.4

63.47

45.9

Associated Gene:

Gene:

CPD

Ensembl Gene ID:

ENSAPLG00000009596

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010066

7269980 - 7296129

26150