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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7289585_7290835_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7289585 - 7290835
Intron Length:
1251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAGTT
5'SS Class:
major
3'SS Sequence:
CATCTCTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTCCTGAGCT
Flanking Amino Acid:
LNYPHITNLTSLGQSVEFRQ
Intron Amino Acid Position:
964

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
77.4
30.6
Major BPS
100
1.24
0.5
100
0
Major PPT
72.8
0.51
1
69
36.7
Minor 5ss
30.3
-2.3
3.6
46.6
48.7
Minor BPS
68.3
0.65
1.7
86.32
39.1

Associated Gene:

Gene:
CPD
Ensembl Gene ID:
ENSAPLG00000009596
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010066
7269980 - 7296129
26150