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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7291032_7291298_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7291032 - 7291298
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGATTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TTCCCCCTGATT
Flanking Amino Acid:
NYKKNSAVTKLIDRTRIVIV
Intron Amino Acid Position:
1030

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
82.8
0.74
0.9
80.4
37
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
59.2
0.37
1.7
77.53
39

Associated Gene:

Gene:
CPD
Ensembl Gene ID:
ENSAPLG00000009596
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010066
7269980 - 7296129
26150