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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7292394_7292833_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7292394 - 7292833
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCAAT
U12 Branch Point Sequence:
TTTCTGTTTATA
Flanking Amino Acid:
TYPFDKPAQTVENKDTLKHL
Intron Amino Acid Position:
1125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
68.1
42.8
Major BPS
59.3
0.23
1.3
66.9
37.7
Major PPT
84.8
0.78
0.8
80.1
32
Minor 5ss
41.7
-0.9
3.1
56
48.1
Minor BPS
47.9
-0.1
2.3
67.89
38.5

Associated Gene:

Gene:
CPD
Ensembl Gene ID:
ENSAPLG00000009596
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010066
7269980 - 7296129
26150