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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7293957_7294276_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7293957 - 7294276
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
ATGGTCTGAACT
Flanking Amino Acid:
ADGYQQKHMKVLVRHDAPSS
Intron Amino Acid Position:
1285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
85
0.79
0.7
77
31.7
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
60.6
0.41
1.6
74.69
42.2

Associated Gene:

Gene:
CPD
Ensembl Gene ID:
ENSAPLG00000009596
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010066
7269980 - 7296129
26150