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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7294377_7294902_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7294377 - 7294902
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
CTCTCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTAACTTCAATA
Flanking Amino Acid:
LPRELVVTVAGASMSALVLT
Intron Amino Acid Position:
1318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
75.6
0.58
0.9
72.4
32.2
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
60
0.31
1.5
69.33
37

Associated Gene:

Gene:
CPD
Ensembl Gene ID:
ENSAPLG00000009596
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010066
7269980 - 7296129
26150