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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7298085_7298233_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7298085 - 7298233
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
TCTCCTCCGACC
Flanking Amino Acid:
MAAGSSNYWEDLRKQARQLE
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
66.2
42.5
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
67.8
0.4
0.7
60.8
21.8
Minor 5ss
20
-3.5
3.8
28.7
43.7
Minor BPS
46.6
-0.2
1.9
60.3
39.1

Associated Gene:

Gene:
GOSR1
Ensembl Gene ID:
ENSAPLG00000009530
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009951
7298054 - 7327462
29409