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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7298343_7300115_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7298343 - 7300115
Intron Length:
1773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGGTA
5'SS Class:
major
3'SS Sequence:
TCCCCCCCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
YSGGRDGRRDSSDTTPLLNG
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
68.2
36.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
68.3
0.41
0.7
65.7
23.2
Minor 5ss
38.2
-1.3
3.7
54.8
49.4
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
GOSR1
Ensembl Gene ID:
ENSAPLG00000009530
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009951
7298054 - 7327462
29409