About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7302115_7302524_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7302115 - 7302524
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TTTTTTCATGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATG
Flanking Amino Acid:
NLLGSVRKDIESYKSGSGVN
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72.5
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85
0.79
0.8
82.3
28.4
Minor 5ss
43.2
-0.7
2.8
54.8
43.5
Minor BPS
60.3
0.18
1.8
69.97
38.4

Associated Gene:

Gene:
GOSR1
Ensembl Gene ID:
ENSAPLG00000009530
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009951
7298054 - 7327462
29409