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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7302600_7317360_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7302600 - 7317360
Intron Length:
14761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
TTTTGGCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAACT
Flanking Amino Acid:
LFLKEHEHLRNSDRLIEETI
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
79
35.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.6
0.78
0.9
81.2
36.5
Minor 5ss
38.9
-1.2
3.7
57.4
41.7
Minor BPS
81.9
1.08
1
90.89
33.1

Associated Gene:

Gene:
GOSR1
Ensembl Gene ID:
ENSAPLG00000009530
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009951
7298054 - 7327462
29409