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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7317391_7325941_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7317391 - 7325941
Intron Length:
8551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
AGCGACTTGATC
Flanking Amino Acid:
NSDRLIEETISIAMATKENM
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
75
0.62
1
65.3
41.5
Major PPT
91.6
0.94
0.6
84.9
29.9
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
48.2
-0.1
1.6
53.24
38.7

Associated Gene:

Gene:
GOSR1
Ensembl Gene ID:
ENSAPLG00000009530
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009951
7298054 - 7327462
29409