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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_736749_739590_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
736749 - 739590
Intron Length:
2842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGCGC
5'SS Class:
major
3'SS Sequence:
GTACCCAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATT
Flanking Amino Acid:
PSTPGKAERPGLLTVGQFHG
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
55.2
43.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
63.3
0.3
1
55.9
38.8
Minor 5ss
26.1
-2.7
3.1
33.6
41.9
Minor BPS
78.7
0.98
1.3
92.74
29.1

Associated Gene:

Gene:
HSF5
Ensembl Gene ID:
ENSAPLG00000012874
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013398
712399 - 740179
27781