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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7386099_7386464_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7386099 - 7386464
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGCGCGGG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTCATTTTATCC
Flanking Amino Acid:
AFKAALACVGGFVLGGAFGV
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.3
1.1
45.2
44.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.3
0.84
0.7
83.7
24.4
Minor 5ss
28.8
-2.4
3.4
28.8
43.7
Minor BPS
49.5
-0
1.6
57.64
41.9

Associated Gene:

Gene:
TIMM22
Ensembl Gene ID:
ENSAPLG00000008846
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009209
7382592 - 7386693
4102