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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7443920_7444464_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7443920 - 7444464
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTACAGCAAAC
Flanking Amino Acid:
QLKALTKQMKEDTEEWRRFQ
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
82.5
0.73
0.8
77.1
37.1
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
42.6
-0.5
2.4
62.39
42.2

Associated Gene:

Gene:
SPECC1
Ensembl Gene ID:
ENSAPLG00000008288
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041850
7420974 - 7478918
57945
ENSAPLT00000038634
7420755 - 7477320
56566
ENSAPLT00000020840
7407635 - 7477129
69495
ENSAPLT00000008643
7387304 - 7477320
90017