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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7454078_7455020_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7454078 - 7455020
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAGGA
5'SS Class:
major
3'SS Sequence:
ATTTGTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATC
Flanking Amino Acid:
APAAAVSPMQRHSVYNNTKP
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
64.6
35.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82
0.72
0.8
76.3
37.2
Minor 5ss
23.7
-3
3.1
29.7
43.1
Minor BPS
76.7
0.82
1
78.69
30.3

Associated Gene:

Gene:
SPECC1
Ensembl Gene ID:
ENSAPLG00000008288
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038634
7420755 - 7477320
56566
ENSAPLT00000020840
7407635 - 7477129
69495
ENSAPLT00000008643
7387304 - 7477320
90017
ENSAPLT00000041850
7420974 - 7478918
57945