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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7459101_7459812_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7459101 - 7459812
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGCT
5'SS Class:
major
3'SS Sequence:
CCCCCTGGCTTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
TCTCCCTTATGC
Flanking Amino Acid:
SSSLKPQSKLSVERKDPLAA
Intron Amino Acid Position:
929

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66
38
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
58
0.18
0.9
56.2
33.5
Minor 5ss
31.4
-2.1
3.7
48.4
47.3
Minor BPS
55.3
0.15
1.9
67.52
44.1

Associated Gene:

Gene:
SPECC1
Ensembl Gene ID:
ENSAPLG00000008288
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041850
7420974 - 7478918
57945
ENSAPLT00000038634
7420755 - 7477320
56566
ENSAPLT00000020840
7407635 - 7477129
69495
ENSAPLT00000008643
7387304 - 7477320
90017