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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7459916_7474950_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7459916 - 7474950
Intron Length:
15035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
CTATTCAGGACT
Flanking Amino Acid:
WCQKKTEGYQNIDITNFSSS
Intron Amino Acid Position:
964

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
90.5
0.91
0.6
88.7
20.5
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
48.8
-0
1.8
69.19
41.6

Associated Gene:

Gene:
SPECC1
Ensembl Gene ID:
ENSAPLG00000008288
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038634
7420755 - 7477320
56566
ENSAPLT00000020840
7407635 - 7477129
69495
ENSAPLT00000008643
7387304 - 7477320
90017
ENSAPLT00000041850
7420974 - 7478918
57945