About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7477093_7478757_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7477093 - 7478757
Intron Length:
1665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTACGTCGC
5'SS Class:
major
3'SS Sequence:
GGTTTTCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTATTTCAAACT
Flanking Amino Acid:
TDRPDWQSVMHKTEN*
Intron Amino Acid Position:
958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.1
52.3
45
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78.7
0.65
0.9
72.5
37.8
Minor 5ss
35.7
-1.6
3.2
49.5
40.8
Minor BPS
48
-0
2
68.42
42.9

Associated Gene:

Gene:
SPECC1
Ensembl Gene ID:
ENSAPLG00000008288
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041850
7420974 - 7478918
57945