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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7486584_7488697_F

Intron Information:

Intron Rank:
135248
Intron Class:
major
Intron Phase:
Intron Coordinates:
7486584 - 7488697
Intron Length:
2114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
CTTACCATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.6
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
42.4
-0.8
3.1
57.6
47.1
Minor BPS
65.5
0.56
1.7
81.74
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022764
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024750
7486351 - 7490533
4183