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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_748727_749144_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
748727 - 749144
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TGCTCCTTCACA
Flanking Amino Acid:
FWLAKRRHHCRNCGNVFCAG
Intron Amino Acid Position:
1083

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
80.3
34.3
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
77.7
0.62
0.8
71.7
32.8
Minor 5ss
40.4
-1.1
3.1
56.9
47.4
Minor BPS
69
0.59
1.8
75.93
41.5

Associated Gene:

Gene:
MTMR4
Ensembl Gene ID:
ENSAPLG00000012976
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013550
748549 - 781584
33036