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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7510428_7510830_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7510428 - 7510830
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
GACCGAACTGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTAAG
U12 Branch Point Sequence:
CATGACCGAACT
Flanking Amino Acid:
SAAEESHKVPYTFSFRLKFI
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
72.3
32
Major BPS
48.6
-0
1.5
55.4
40.2
Major PPT
44.4
-0.3
1.7
40.4
38
Minor 5ss
34.6
-1.8
3.1
44.4
43.5
Minor BPS
45
-0.3
2
64.06
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020276
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045291
7510273 - 7510906
634