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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_751273_751636_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
751273 - 751636
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCGGGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTGTTCTGAGAT
Flanking Amino Acid:
SQEFSGRCLDRLPKTRSMDD
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
71
0.47
1
60.7
44.7
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
52.3
0.15
1.8
73.92
42.7

Associated Gene:

Gene:
MTMR4
Ensembl Gene ID:
ENSAPLG00000012976
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013550
748549 - 781584
33036