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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7516553_7516654_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7516553 - 7516654
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
TTCCCCCCAAAT
Flanking Amino Acid:
AIVLLLKRAKLSAMKGELGE
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
72.8
0.51
0.8
66.2
30
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
48.8
-0
2
72.33
43.7

Associated Gene:

Gene:
TTC19
Ensembl Gene ID:
ENSAPLG00000008122
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008451
7516140 - 7520007
3868