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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7516960_7517479_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7516960 - 7517479
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
ATTCTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCTTCAAAA
Flanking Amino Acid:
VAFMQGQLDNAEKLYKAAMS
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.9
0.72
0.8
78.6
33.8
Minor 5ss
32
-2.1
2.7
36
33.5
Minor BPS
62.4
0.38
1.6
72.74
39.3

Associated Gene:

Gene:
TTC19
Ensembl Gene ID:
ENSAPLG00000008122
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008451
7516140 - 7520007
3868