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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_751792_751912_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
751792 - 751912
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GCGATTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATCTCTAAAC
Flanking Amino Acid:
NLLYMPGSEQVLHPVCHVRA
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
68.4
0.41
1.1
61
44.5
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
54.4
0.12
1.8
65.19
40.1

Associated Gene:

Gene:
MTMR4
Ensembl Gene ID:
ENSAPLG00000012976
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013550
748549 - 781584
33036