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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7518544_7518739_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7518544 - 7518739
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGTG
5'SS Class:
major
3'SS Sequence:
TCTCTGTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
ATCACTTCCACT
Flanking Amino Acid:
QKDLPEDVLSAEEKANTRLL
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
65.9
40.1
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
85.2
0.79
0.8
79.9
32.1
Minor 5ss
27.2
-2.6
3.6
37
47.6
Minor BPS
47.5
-0.1
2
67.05
43.8

Associated Gene:

Gene:
TTC19
Ensembl Gene ID:
ENSAPLG00000008122
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008451
7516140 - 7520007
3868