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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7519364_7519831_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7519364 - 7519831
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
AATTGGCTAGCC
Flanking Amino Acid:
NNLAAILMHKKDFLQARQVY
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
77.9
0.63
0.8
71.6
33
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
38.7
-0.8
2.6
54.75
43

Associated Gene:

Gene:
TTC19
Ensembl Gene ID:
ENSAPLG00000008122
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008451
7516140 - 7520007
3868