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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7527303_7527377_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7527303 - 7527377
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTCC
5'SS Class:
major
3'SS Sequence:
CATGGGTATGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TGACTCAGACAT
Flanking Amino Acid:
FTKLENTSPMDFSMNFCNLS
Intron Amino Acid Position:
719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
62.6
36.7
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
58.3
0.19
1
50.9
42.7
Minor 5ss
37.5
-1.4
3.3
47.7
43.5
Minor BPS
39.3
-0.7
1.8
54.48
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007503
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007855
7524034 - 7538537
14504