Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7528774_7529020_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7528774 - 7529020

Intron Length:

247

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAGGTTTA

5'SS Class:

major

3'SS Sequence:

TGACCACAATCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

CTTTTTTTGACC

Flanking Amino Acid:

RLITLADHICQIITQDFARN

Intron Amino Acid Position:

573

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.7

0.39

1.2

39.9

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

56.2

0.14

53.2

40.6

Minor 5ss

44.4

-0.6

3.1

57.9

46.7

Minor BPS

72.1

0.68

1.1

76.51

34.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007503

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030749

7524034 - 7532487

8454

ENSAPLT00000007855

7524034 - 7538537

14504