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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7529831_7530283_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7529831 - 7530283
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTACGTATC
5'SS Class:
major
3'SS Sequence:
GCTCGATATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCTGCAACT
Flanking Amino Acid:
GSQSSDSSSSLSSHRYEAPG
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
71.1
38.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
65.8
0.36
1
57.7
41.5
Minor 5ss
41.8
-0.9
3.1
60
38.8
Minor BPS
56.3
0.28
2.2
81.34
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007503
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007855
7524034 - 7538537
14504