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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7530781_7531047_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7530781 - 7531047
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TGTTTGCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTGATATAATT
Flanking Amino Acid:
PLDPAAQLRIMQLTPGAPSI
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
77
32.4
Major BPS
100
1.24
0.5
100
0
Major PPT
72.1
0.5
1
66.7
39.5
Minor 5ss
61.5
0.39
2.2
74.2
34.9
Minor BPS
48.9
0
1.9
70.41
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007503
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007855
7524034 - 7538537
14504