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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7531214_7531722_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7531214 - 7531722
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAACGAG
5'SS Class:
weak_major
3'SS Sequence:
TTATTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
TCTGCTTTATTT
Flanking Amino Acid:
RERERERERERTEQPGRPGS
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.5
0.18
1.3
52.6
40.7
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
89.2
0.88
0.7
85.2
29.3
Minor 5ss
31
-2.2
3.4
35.9
41.9
Minor BPS
59.4
0.37
1.7
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007503
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007855
7524034 - 7538537
14504