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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7534239_7538473_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7534239 - 7538473
Intron Length:
4235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTATTTGAA
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTTTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ATTTTCAGATTT
Flanking Amino Acid:
EVSVVRISSSSGISSGKPAN
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.3
0.15
1.2
56
36.8
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
79
0.65
0.9
81.2
36.5
Minor 5ss
40.1
-1.1
3.1
48.9
47.3
Minor BPS
47.8
-0
1.9
71.92
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007503
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007855
7524034 - 7538537
14504