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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_753703_754078_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
753703 - 754078
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GCACACCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAC
U12 Branch Point Sequence:
TTTTGCACACCT
Flanking Amino Acid:
AVCSQVPDPSNWLSALESTK
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
65.1
0.38
1.4
77.4
37.4
Major PPT
61.8
0.27
0.9
51
38.8
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
46.3
-0.2
2.4
77.18
45

Associated Gene:

Gene:
MTMR4
Ensembl Gene ID:
ENSAPLG00000012976
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013550
748549 - 781584
33036